rs108530948 SNP Detail

Summary

• ID
  rs108530948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46436461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCCGGC GGGTCACAGG
  CTTGTGCCGG GAAGAACACC GAAAAATCGA GGAGTGCGTG AAGATGGCTC ATCGAGCAGG
  TCACAGTACC CAAGACTCAG AGGGGTGGTG GGGACTCCAG TTCCTCTTCC CAGCCAGCTG
  TCACAGCTAG AGAGGGGGTG AGCGCATTCA CTTGTGCGCA CACACAGCCA CACACACAAA
  Y
  ACGCCCCACA CTCCACACAC ACCCTCCTCC CCACTCCCAT GGTCTTTACC CCTGGCCCTT
  TCAGAGCTGT GAAGACTGAC CCCTCATGTG TTCTTCCTTC CACACAGGTC TGTTACCAAA
  TCACAGACCA CAGCTTCCAG AAGGATGCTT ACCAAAGGAT AAACCCAAGC TCAACCGGTA
  AGAAGTCATG CCTACAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398315249	MGP_WTSI_17_46262484	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C	T	T	T	C	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108530948					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C	T	T	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398315249	MGP_WTSI_17_46262484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46436461 () rs orientation: forward

Symbol	Name	Function Class
Mrps18a	mitochondrial ribosomal protein S18A	within coordinates
Rr341804	regulatory region 341804	661 bp distal
Rr341805	regulatory region 341805	within coordinates
Rsph9	radial spoke head 9 homolog (Chlamydomonas)	within coordinates
Tssr5133	transcription start site region 5133	1305 bp downstream
Tssr144816	transcription start site region 144816	1257 bp downstream
Tssr144817	transcription start site region 144817	1222 bp downstream