rs108538275 SNP Detail

Summary

• ID
  rs108538275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171977445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTAGTTGG TATCTAAGTC CAGTTAGCCT CAGAGGCACA
  ACTTTTCAAA AGGTAGTGGG ATTTCTTTTC TTTCTTTCTT CCTTTCTCTC TCTCTCTCTC
  Y
  CTTCCTTCCT TTTCTTTTCT TTTCTTTTCT TTTCTTTTCT TTTCTTTTCT TTTCTTTCTT
  TCTTAAAAGC AGTTCCTTTT GTAGCTAACT TGCAGATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120006877	PARCsnp_1.17516	PARC_SEQ	INBRED	f	SNP	C	T
ss120009748	PARCsnp_1.07141	PARC_SEQ	INBRED	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108538275					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171977445 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			973 bp distal
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Gm70088	predicted gene, 70088			1891 bp upstream
Rr372457	regulatory region 372457			126 bp downstream
Rr423469	regulatory region 423469			1902 bp distal
Rr423470	regulatory region 423470			1690 bp distal
Rr423471	regulatory region 423471			29 bp distal
Rr423472	regulatory region 423472			88 bp proximal
Tssr10170	transcription start site region 10170			1830 bp downstream
Tssr10171	transcription start site region 10171			1784 bp downstream
Tssr10172	transcription start site region 10172			1775 bp downstream
Tssr10173	transcription start site region 10173			1702 bp downstream
Tssr15148	transcription start site region 15148			1913 bp upstream