rs108538640 SNP Detail

Summary

• ID
  rs108538640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:7833059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGCATG AACTCGTTCA
  GCCGACTATG CTTCCACCCA GAACACTGCT GCGGGACAGT AATTCACTAA ATCGGACCCC
  GGTGGCTGGG AAGAACAAGA ATAGTATGAT TTATTCCCGG AGATTACTTT GCAAACTGAA
  AATCACGTTT ATTACCTCCT CTGTTCACAC AGTATCCCAG TCAGAGGGAG AGAAGTAGCA
  R
  CATGGTGAGG CAGGGAGGAG GAGGTGAGGC CAGGATGCTG CCTTTGCTGT AGCGGCCACA
  GCCGGCTAAG GGCAGAGCTG CCTCTCTGAG TACCTGAGCA TCCTGCAGGA CTTCTGCCCA
  GTTGGGATTT GGGGCTTTTG AGTTCAACTT TCAGCTAAAT GGGGCTAGCA TTCCAGTAAA
  GTGAGTGAGG TCCCAGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147048744	ENSMUSSNP4703917	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108538640					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:7833059 () rs orientation: forward

Symbol	Name	Function Class
Gm62001	predicted gene, 62001	1380 bp upstream
Gm63130	predicted gene, 63130	535 bp downstream
Rr304117	regulatory region 304117	59 bp distal
Rr314449	regulatory region 314449	505 bp proximal