rs108538690 SNP Detail

Summary

• ID
  rs108538690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20362195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTGCCCAGGC CTCTGCTTCC TGGCGGCGCG TTAGAGGCGG
  GCGACCCGAT TGGCGGCCAG GCCTGCGCCC CGCCCCGCCG GGCGGGACTC CGCGCCCTCC
  Y
  CAGCCGGGCC CTCCCCTTTC CGCGGGAGGC GTCCTGTTTA GCGGCTTGGT GGCTCCCAGT
  TCTCGCTGAC TGCGCGCCCG CGTCTGGGCT CCTTTGCAGA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137276302	ENSMUSSNP5068678	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108538690					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20362195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	within coordinates
Gm49697	predicted gene, 49697	321 bp upstream
Gm61293	predicted gene, 61293	23 bp upstream
Rr463625	regulatory region 463625	within coordinates
Tssr112921	transcription start site region 112921	21 bp upstream