rs108541020 SNP Detail

Summary

• ID
  rs108541020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAGAAT GCTTTTTATC
  TCTCCTAACC AAAAGCTACA CATTACCGAA AAATTTGAAC CTCATGTAAG CGTGCAAGGC
  ATAATGAAAT CGATTGCTGA GGACAGTGTG GCTTTAAAGT GTTAGCTCCT TGTTTCGAAC
  ATTGTCAATA TTTTGGCATT GCTCATAGGG AGTATTGCTG CTTCTCATGA TTCCATGAGT
  R
  AAATTGTCAC ATGAATTATA TGTCTTGTTG TGTGACATTT AAATTAAAAA TGAAGGTGAT
  GTGTATTCAG AAGAAGTTAT TCATGCTATT AATTTAATGG ATTAAATTAA ACATTTTAAT
  TATCATGAGT GGTTCTACTA GTTACTACTT AAATATCTGA ACAGGGATTG CATTGTGCAT
  TTTAAATTTC TTAAATTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148902939	ENSMUSSNP1261166	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324322207	CHEV_13_39161513	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108541020					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253620 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	within coordinates
Rr388296	regulatory region 388296	within coordinates