rs108541272 SNP Detail

Summary

• ID
  rs108541272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47748485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCGTTCGT TCTGTTTGAG
  AAAGGAAAGT CAGCGAGCAG GCCACTGTTA GCAGATTGCC AGCCATTTGC GACATCAAAT
  TAGCTTTGTT TGGTTTGGTT GGGGGTGGGG AGGGAAGGGG GCTGAGTGTC ACATGCTCTT
  GCCCAGGTCC TCTTGGATCT GGGTTGTCTA TGGTCTCGGA CTGAAGAGTC AGAGGTGGGA
  Y
  AGAGGAGAGT GCGGACCCTT TGAATCAAGG GTGGTGTGTC TTTGCAAACT ACTGGAAATA
  AATTGGCCCT TCCCCAGCTC CGGCTATGGG ACACTCCTAT CTCTTTGTCA ATCTCCAGTT
  TATACACTCT TAACTGGGGG GAACCCCGGG AAAATGGGGG AACGGTACTC ACTTCTTGTT
  TTTGATCCAT GCTTCTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398346290	MGP_WTSI_17_47574509	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108541272					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398346290	MGP_WTSI_17_47574509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47748485 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	within coordinates
Cimip3	ciliary microtubule inner protein 3	184 bp upstream
Cpgi9259	CpG island 9259	168 bp distal
Rr339933	regulatory region 339933	within coordinates
Tssr144911	transcription start site region 144911	965 bp downstream
Tssr144912	transcription start site region 144912	952 bp downstream
Tssr144913	transcription start site region 144913	921 bp downstream
Tssr144914	transcription start site region 144914	902 bp downstream
Tssr144915	transcription start site region 144915	817 bp downstream
Tssr148437	transcription start site region 148437	313 bp upstream
Tssr148438	transcription start site region 148438	169 bp upstream