rs108542358 SNP Detail

Summary

• ID
  rs108542358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:120104089 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATAT GACAGACTTT CAATTTGAAA
  Y
  ATCTGCCCAG TAGTCCAACA GGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136155431	ENSMUSSNP3679447	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108542358					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:120104089 () rs orientation: reverse

Symbol	Name	Function Class
Ccl28	C-C motif chemokine ligand 28	within coordinates
Gm60502	predicted gene, 60502	1346 bp downstream
Rr270688	regulatory region 270688	1489 bp distal
Rr270689	regulatory region 270689	112 bp proximal
Rr282566	regulatory region 282566	1603 bp distal
Rr282567	regulatory region 282567	89 bp distal