rs108546680 SNP Detail

Summary

• ID
  rs108546680
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:19584088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTCAGG AGTTGTTTAG
  CTGTATCCAT ATGGTTCCTT TTTGAGAATT CTCCGCATGA TTTCCATAGC GGCTGACTCC
  ATTTGCAATC CCATCAGCAG TGAATGAGGA TTTCTTCATC TCCTGGAGAA TTTGTAGTTG
  GTTATTTCAC TTTTTCATTC AAACTGGAGT AAGATAGAAT CTCAAAGATG TTTGGGTTTG
  K
  GTTTCACTAA TTTCTAGAGA TGATGATCAA TGTTTGAGAT ATTTCTTAGC TAATAATTTT
  TTCTTTCAGG AACACTTTTC AGGTTCAAAC CCCCATTGTT TGAGGTGGTC ATTTGGTTTG
  GGGGTTATTT TTAGTTTGCT TTCTCATTTC CAGTGTATTC TGGATAGTAA TCCTTTGTTA
  CATGTGTAGC TGGCCAATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146812278	ENSMUSSNP3837693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108546680					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:19584088 () rs orientation: forward

Symbol	Name	Function Class
Gm7718	predicted gene 7718	within coordinates
Rr393367	regulatory region 393367	1306 bp upstream