rs108547942 SNP Detail

Summary

• ID
  rs108547942
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16859315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCAGCC TGGAAGTTGC
  GCATTGTGTT ACCCTTTCAT TCAAACACAT AGCGGCTAGA GCTGTGGCTC TGGAGTTAAG
  AGCACTTCTG CCTTTCCAAG AGGGCCAAAG CATCCATCTC TAGCCATTTG CAACTTCAGC
  TCCTGGGGAG CCAGAAGCCT CAAGCCTCTG AAAGCATTGC AGTTCATGTG CACAAACCCA
  C
  ACACACACAT AATTTAAAAA TAAGTGAAAG GGGCCAAAGA GATGGCTCAG TGGTTAAGAG
  CACTGACTGT TCTTCCAGAG AACCCAGGTT TAATACCCAG CAACCACCTG GTGGCTTACA
  ACTGTCTGTA ATTCTAGTGT CAGAGAACAT GGTGTCCACA CACAGACATG CAGGCAGGCG
  AAACATCAAA CCACACTGCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137195982	ENSMUSSNP2056110	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs108547942					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16859315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4441	CpG island 4441	1280 bp proximal
E2f6	E2F transcription factor 6	1617 bp upstream
Rr463369	regulatory region 463369	897 bp distal
Rr463370	regulatory region 463370	1177 bp proximal
Rr463371	regulatory region 463371	1674 bp proximal
Tssr112858	transcription start site region 112858	1626 bp upstream
Tssr112859	transcription start site region 112859	1665 bp upstream