rs108552511 SNP Detail

Summary

• ID
  rs108552511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50583502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCTGCTGTCA CCTGAATTTT TGATGTTAGC CATTCTGACT
  AGTGTGAGGT GGAATCTCAG GATTGTTTTG ATTTTCATTT CCCTGATGAT TAAGGATGTT
  R
  AACATTTTTT TTTCAGGTGC TTCTCAGCCA TACCAGTTTT CTTCAGTTGA GAATTCTTTG
  TTTAGCTCTG TACCCCATCT TTTAATGGGC ATATTTGATT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133182522	ENSMUSSNP5005209	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108552511					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50583502 () rs orientation: forward

Symbol	Name	Function Class
Rr379340	regulatory region 379340	674 bp upstream
Tssr56424	transcription start site region 56424	1898 bp upstream