rs108553986 SNP Detail

Summary

• ID
  rs108553986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26316420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC TCTGTGTAGC CCTGGCTGTC
  Y
  TGGAACTCAC TCTGTAGACC AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325339820	CHEV_17_26234391	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108553986					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26316420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8797	CpG island 8797	1783 bp distal
Gm8186	predicted gene 8186	1545 bp downstream
Nme4	NME/NM23 nucleoside diphosphate kinase 4	1844 bp upstream
Rr523761	regulatory region 523761	1984 bp distal
Rr523762	regulatory region 523762	1612 bp distal
Rr523763	regulatory region 523763	1988 bp proximal
Tssr146914	transcription start site region 146914	1997 bp upstream
Tssr146915	transcription start site region 146915	1985 bp upstream
Tssr146916	transcription start site region 146916	1966 bp upstream
Tssr146917	transcription start site region 146917	1932 bp upstream
Tssr146918	transcription start site region 146918	1811 bp downstream