rs108554798 SNP Detail

Summary

• ID
  rs108554798
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165062557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AATGGCCCGG CGAGTGGTAC ACGCCTTTAA TCCCAGCACT
  TGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TCAAGGCCAG CCTGGTCTAC AGAGTGAGTT
  C
  TAGGACAGCC AGGGCTATAC AGAGAAACCC TGTCTCAAAA AACAACGACA AAAAAACAAA
  AAAAAAAAAA CAAAAAAAAC AAAAAAAAAA AAACAATGAA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145997516	ENSMUSSNP2564175	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108554798					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165062557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	1277 bp proximal
Gm38190	predicted gene, 38190	within coordinates
Rr372385	regulatory region 372385	1378 bp upstream
Rr422343	regulatory region 422343	779 bp proximal
Rr422344	regulatory region 422344	1533 bp proximal
Rr422345	regulatory region 422345	1945 bp proximal
Rr422346	regulatory region 422346	1951 bp proximal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	within coordinates
Tssr9804	transcription start site region 9804	1506 bp upstream
Tssr14765	transcription start site region 14765	1904 bp downstream
Tssr14766	transcription start site region 14766	1992 bp downstream