rs108555873 SNP Detail

Summary

• ID
  rs108555873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40153694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtatgcctc agtacagggg aaccccaggg
  acatgaagtg gtagtgggtg ggtagaggag tgggttgggg cggtatgggt gactttgggg
  atagcattgg aaatataaat gaagaaaata actaattaaa ataaaataaa ataaaataaa
  W
  TTTAAAAGGA AGGATTATGA AAGGATTTGG GATTTCGGGT CAGAGTGTAA TTGAATACTA
  AGGATCAGTG TGGTATTCTA TAATTgtttg agtgaccttt aaggcttcat aggccaatag
  caatttagat ttaagatttt gtcattaagt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385427	CHEV_17_39979748	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108555873					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40153694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	184 bp proximal
Gm26917	predicted gene, 26917	194 bp upstream
Tssr148051	transcription start site region 148051	517 bp downstream
Tssr148052	transcription start site region 148052	680 bp downstream
Tssr148053	transcription start site region 148053	825 bp downstream
Tssr148054	transcription start site region 148054	1328 bp downstream
Tssr148055	transcription start site region 148055	1572 bp downstream
Tssr148056	transcription start site region 148056	1914 bp downstream