rs108556465 SNP Detail

Summary

• ID
  rs108556465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87755397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATAAGG ATTCCATCCT
  CAAAATACAG TGCCCAGAGA AGATTGATGG AACAGCCACG GCCCAGAGAG AATTAGGAAG
  ATGGCGAAGG CAGAAAGAAC TTCCCAGTTG AAAAAGCACC ACCATGCAAA CCCTCAAACC
  GTGGAGAGCA ATCACTTTGT AAAAAGCAAG GCAAGATGAA ACCTCAACTT CAGAAAGAAG
  Y
  CTGCCTTCAG GATAGTTTCC CCGTTCAGCA AGAACATTTC GGTGCTAACA GCTATATGCA
  CCCACTCGGA GAGTCCATTT TAACCTCCTT TACCTAAGTT AGACATCCCT CACACCTTTA
  AACATATCTT TTAATGAAGC CAGAGCTGGG CCCTCTTTCA GTCATGGAAA CCAGACATTA
  AGCGGCCTTC TAATTAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399364136	MGP_WTSI_17_87847309	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108556465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399364136	MGP_WTSI_17_87847309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87755397 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	1034 bp upstream
Cpgi9626	CpG island 9626	448 bp distal
Gm65472	predicted gene, 65472	within coordinates
Rr370330	regulatory region 370330	1048 bp downstream
Rr370331	regulatory region 370331	728 bp downstream
Rr393074	regulatory region 393074	1499 bp downstream
Rr532694	regulatory region 532694	1922 bp distal
Rr532695	regulatory region 532695	1356 bp distal
Rr532696	regulatory region 532696	1124 bp distal
Rr532697	regulatory region 532697	544 bp distal
Tssr146185	transcription start site region 146185	1819 bp downstream
Tssr146186	transcription start site region 146186	1289 bp downstream
Tssr146187	transcription start site region 146187	731 bp downstream
Tssr149773	transcription start site region 149773	1100 bp upstream