rs108556986 SNP Detail

Summary

• ID
  rs108556986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154521916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGATTG TATCCTGAAG GTTCCAATCA ATGGGTAAAT CCACCGATGA
  GGTCATGCCT CGTAGGCTGT TAGGAGGAAG TGGTCCACTG AGCTATGCCT GGTAAGTAGT
  TCGTACCCGT TCCTTCCTTG GTTCCTCTAC TTTCTGACCG CTGTGAACTA AGTAGCTCTG
  Y
  TGTGCCCTTG TGCTCAGATG CTCCGCCTCA TCGCAGGCTC CAAAGCAGTG AGGCTAACTG
  ACCATGGGAC TGATGCTTTT GAAACTGTGA GCCAAAATAA ATCCTTCCTC TTTTAAGTTG
  ATTTTGCCAG GTATTATGTA CCACCAACAT ACAGCCGGAT TTGAATCTAC TATTTTGAGG
  TATAGATGAT TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148102366	ENSMUSSNP3669885	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108556986					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154521916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15440	CpG island 15440	936 bp proximal
Prdm16	PR domain containing 16	within coordinates