rs108557265 SNP Detail

Summary

• ID
  rs108557265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75546586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCCGTAC AGAGGCTCCG CCTGTCCCGG GGCGCCGGCC
  GTATTTGGAC ATTTCGTTCT ATTTTTAACT TTCCCGGGAC TCGAGGTTGG GGGTGGGGAG
  R
  GAAATCCTGC TTCCCCGGTG ACCCACGGGC TTCAGCCCTC GTCTCGCGCG GGGTGTCCAG
  CCCCGTGCTG TAGACACGAG CCCGGAAGTG AGTTCCGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132438929	ENSMUSSNP609743	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323751160	CHEV_11_75469262	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108557265					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75546586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3272	CpG island 3272	1044 bp distal
Cpgi3273	CpG island 3273	within coordinates
Gm71962	predicted gene, 71962	1957 bp upstream
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	884 bp downstream
Rr451244	regulatory region 451244	1968 bp distal
Rr451246	regulatory region 451246	1467 bp distal
Rr451247	regulatory region 451247	within coordinates
Rr451248	regulatory region 451248	124 bp proximal
Tssr103026	transcription start site region 103026	within coordinates
Tssr103027	transcription start site region 103027	85 bp upstream
Tssr103028	transcription start site region 103028	151 bp upstream
Tssr103029	transcription start site region 103029	168 bp upstream
Tssr103030	transcription start site region 103030	219 bp upstream
Tssr103031	transcription start site region 103031	243 bp upstream
Tssr103032	transcription start site region 103032	343 bp upstream