rs108557302 SNP Detail

Summary

• ID
  rs108557302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACAACT TTATTGTTAT
  AATTCTCATG ATTAAAATTC ATTTTTTTAA ACTAAACACT TTTTAGTATG TTTACAAATT
  TATGTGACAT AACCCTACTT ATGCTTTCAT TTCCTATAAT CTCTTCCTTT AGCCCCAATA
  TCTGTCCTGT ACTCTACTCA GTTAATTATG TTTACCTTCT GGTTACTTTG AAATTCTATA
  Y
  GAGTTTTAGG ATCAACATAT CAGTTTTGGT AGAAAAACAG CCAAGAATTT TAATTAGTTT
  GTTTGGTTAC AGGCAGGGTG TAACTCATGT TTTCCTAGCT GATCTTGAAT TCTCAAGAGA
  TCTGTCTGCC TACTAAGGCC TAGCTTGGCT TTCTAATAAA CATAGGATAT CTTGCTTGTT
  CATTCCTTCC CTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145293422	ENSMUSSNP2605172	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108557302					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815187 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1884 bp downstream
Tssr67723	transcription start site region 67723	431 bp downstream
Tssr67724	transcription start site region 67724	73 bp upstream
Tssr67725	transcription start site region 67725	118 bp upstream
Tssr67726	transcription start site region 67726	131 bp upstream
Tssr67727	transcription start site region 67727	195 bp upstream