rs108557928 SNP Detail

Summary

• ID
  rs108557928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107112594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG AGGAGCATGC TTATGAGTTG
  K
  TTTTTTTTTT TTTTAATCTG CCCCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147176147	ENSMUSSNP2379331	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108557928					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107112594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14538	CpG island 14538	1183 bp distal
Ift25	intraflagellar transport 25	within coordinates
Lrrc42	leucine rich repeat containing 42	1865 bp upstream
Rr398372	regulatory region 398372	1653 bp downstream
Rr596957	regulatory region 596957	1876 bp distal
Rr596959	regulatory region 596959	1462 bp distal
Rr596960	regulatory region 596960	1598 bp distal
Rr596961	regulatory region 596961	609 bp distal
Tssr38233	transcription start site region 38233	1495 bp downstream
Tssr38234	transcription start site region 38234	1479 bp downstream
Tssr38235	transcription start site region 38235	1458 bp downstream
Tssr38236	transcription start site region 38236	1721 bp upstream
Tssr42679	transcription start site region 42679	1991 bp upstream
Tssr42680	transcription start site region 42680	1906 bp upstream
Tssr42681	transcription start site region 42681	1873 bp upstream