rs108562722 SNP Detail

Summary

• ID
  rs108562722
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85921200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGCGCGGA GCCCTTTGAA AGGACTTACA
  CTTCCTAATG AATATTTATC CGCCGCTGCT ACACGCTCCC GGCTTCTCTT ACCTTTCTGC
  AGGTAAGATC TTCCCTGTTC CCCTACCCTG gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  S
  ATCCGGAATT CCCACCCCTC CCCACACTCG GGCGCGGGTG GTCAGTCTTT GGCCGACGGG
  GTGAGGTGAG GGGTAAGGTG GCTTCTCTGT GTGCGATGGG TCCCGCACGA CCAACACAGG
  GTGGGGGGCA CTACCTGTGT AGGACgagag                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486756	CHEV_17_86013112	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108562722					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85921200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	700 bp distal
Cpgi9588	CpG island 9588	within coordinates
Cpgi9589	CpG island 9589	907 bp proximal
Gm55782	predicted gene, 55782	168 bp downstream
Gm55783	predicted gene, 55783	890 bp upstream
Gm55784	predicted gene, 55784	1188 bp upstream
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	534 bp downstream
Tssr146085	transcription start site region 146085	287 bp downstream
Tssr149705	transcription start site region 149705	1395 bp upstream
Tssr149706	transcription start site region 149706	708 bp upstream
Tssr149707	transcription start site region 149707	1030 bp downstream
Tssr149708	transcription start site region 149708	1228 bp downstream
Tssr149709	transcription start site region 149709	1275 bp downstream
Tssr149710	transcription start site region 149710	1364 bp downstream
Tssr149711	transcription start site region 149711	1392 bp downstream
Tssr149712	transcription start site region 149712	1682 bp downstream