rs108567812 SNP Detail

Summary

• ID
  rs108567812
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32383985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGTGGGC CCCTGTAGAA GTTTTGTTCC TCAGAGAGAG
  AAGGAAAGGA GATTGGGGGA GAATTGAGAA ATAGGGACAG ACAGAAACTG AAAGGAGAAA
  M
  CAACCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAC AGAGACAGTA AAAGGATGAG
  TTAAGAATGA AGGACCTATT CAATTTTGTG ACATCACAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325361631	CHEV_17_32301956	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108567812					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32383985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8964	CpG island 8964	578 bp proximal
Cpgi8965	CpG island 8965	1619 bp proximal
Notch3	notch 3	within coordinates
Rr339597	regulatory region 339597	15 bp proximal
Rr370218	regulatory region 370218	468 bp downstream
Tssr147343	transcription start site region 147343	within coordinates
Tssr147344	transcription start site region 147344	1737 bp downstream
Tssr147345	transcription start site region 147345	1868 bp downstream