rs108570053 SNP Detail

Summary

• ID
  rs108570053
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCAGAG TTCAAATCCC
  AGCAACCACA TGGTGGCTCA CAACCATCCG TAACAAGATC TGACTCCCTC TTCTGGTGTC
  TGAAGACAGC TACAGTGTAC TTACATATAA TAATAAATAA ATCTTAAAAA AAAAAAAAAA
  AGAATTTTCC TTATCAAGTA GCAAAAAAAT TTTTTGAGAG TTTTTTTTTT TTTGTTTTTT
  K
  TTTTTTTTTT AGCCTGGTTT AAACAGTGAG TTCCAAGACA GCTGGGGCTA CAAAGAGAGA
  CTCTGTTTCA AAAAAATTTT TTTTCAAAAT TTAATTTCAT GTGTCGTGCC TGAATATGTG
  CATCATGTGC ATACCTTGTG TCTGCAGACC CCAGAGAGGG TGCTGGGCAC CAAATTTGGG
  TCCTCTGTAA GAACATGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398327280	MGP_WTSI_17_46864755	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108570053					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398327280	MGP_WTSI_17_46864755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	897 bp proximal
Cpgi9243	CpG island 9243	1942 bp proximal
Gm65860	predicted gene, 65860	1241 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Tssr148377	transcription start site region 148377	1483 bp upstream
Tssr148378	transcription start site region 148378	1464 bp upstream
Tssr148379	transcription start site region 148379	1451 bp upstream
Tssr148380	transcription start site region 148380	1088 bp upstream
Tssr148381	transcription start site region 148381	434 bp upstream
Tssr148382	transcription start site region 148382	1352 bp downstream