rs108574007 SNP Detail

Summary

• ID
  rs108574007
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:6181934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGGAGTAG TCCTTCCTTT CTGCATTATT CTGTACCCTA
  CGTTTAGAAT AGAGCAGAGT GAATAGTCTT CGAATATCCT TTTATTTTAG TCCAGAGTTT
  W
  TTTATTTATT TATTTATTTA TTTTTTTTTT TTGCTGTCTC AAAAAGCTTT ATTTTTACTT
  GGTCCAAGAC TTGACAGAGG CTCCAGGGCG GTTACAAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325290125	CHEV_17_6131659	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108574007					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6181934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15590	predicted gene 15590			195 bp downstream
Gm55175	predicted gene, 55175			177 bp downstream
Gm66616	predicted gene, 66616			13 bp upstream
Rr392221	regulatory region 392221			1641 bp downstream
Rr521310	regulatory region 521310			1944 bp distal
Rr521311	regulatory region 521311			575 bp proximal
Tulp4	TUB like protein 4			Intron
				Noncoding-Transcript-Variant