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rs108575906 SNP Detail
Summary
  • ID
    rs108575906
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:57386977 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATTCAGTGA TTCAGTGTGG
CCACACTGGA AAGGGGGGGG GGACGGGATG GGGGAGATCC AGTGACCTTC AGGTCCATCT
TTCCAAAGTA CAGACTGTGG CCCCAGTATG CATGTTCCTG GTGTGCAAGT GGCTTATCTT
ACACTACAGA GTTGCTCTGG TCTAGCCTGG TCTGTTTGGC TCTGCAATCC CTGTACCCCA
Y
CACTCCAGGA GCTGATCTTC AGTGGCTGGT GGGCCCCTCC ACTCCCTAGC TGCACTCAGA
GAAGAAACTA AATCAAACAG AAACCACACC AAAGCAATGA CTCATTTATT GATGGAGGGT
CAGCAGGGGA GAGCAGGGTG GGGTGGATTT TAGGGAGGGG CTCTCTCACC CCAGGCAACA
GGCCTCTCTT TTTCCTCGTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398570132 MGP_WTSI_17_57219400 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108575906 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398570132 MGP_WTSI_17_57219400 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:57386977 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi9393 CpG island 9393 1112 bp proximal
Dennd1c DENN domain containing 1C 1459 bp upstream
Gm56907 predicted gene, 56907 within coordinates
Rr529265 regulatory region 529265 1478 bp distal
Rr529266 regulatory region 529266 1386 bp distal
Rr529267 regulatory region 529267 780 bp distal
Rr529268 regulatory region 529268 within coordinates
Tssr5182 transcription start site region 5182 242 bp upstream
Tssr145371 transcription start site region 145371 1368 bp downstream
Tssr145372 transcription start site region 145372 270 bp upstream
Tssr145373 transcription start site region 145373 617 bp upstream
Tssr145374 transcription start site region 145374 711 bp upstream
Tssr148878 transcription start site region 148878 1560 bp upstream
Tssr148879 transcription start site region 148879 1519 bp upstream
Tssr148880 transcription start site region 148880 1493 bp upstream
Tssr148881 transcription start site region 148881 1458 bp upstream
Tssr148882 transcription start site region 148882 385 bp downstream
Tssr148883 transcription start site region 148883 480 bp downstream
Tssr148884 transcription start site region 148884 553 bp downstream
Tssr148885 transcription start site region 148885 630 bp downstream
Tssr148886 transcription start site region 148886 657 bp downstream
Tssr148887 transcription start site region 148887 681 bp downstream
Tssr148888 transcription start site region 148888 708 bp downstream
Tssr148889 transcription start site region 148889 745 bp downstream
Tssr148890 transcription start site region 148890 841 bp downstream
Tssr148891 transcription start site region 148891 959 bp downstream
Tssr148892 transcription start site region 148892 979 bp downstream
Tssr148893 transcription start site region 148893 1193 bp downstream
Tssr148894 transcription start site region 148894 1265 bp downstream
Tssr148895 transcription start site region 148895 1669 bp downstream
Tssr148896 transcription start site region 148896 1731 bp downstream
Tubb4a tubulin, beta 4A class IVA 84 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory