rs108577744 SNP Detail

Summary

• ID
  rs108577744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152586980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTGGCT GGGTCCTGCT
  TAGGAGCATC ATAGTGGGTC AGCACCATAG AAGGCTTCCG TGCACATCGG GGGAGGGGGT
  CTTCCACAGG CACTTTGCAT GCAAGGTTAG GTGTTTGGGA CCAAAGCTAG ACAGACTCAA
  CGGCTCCCAC AGTTATCCCT GCAGCTCCTC CCAGCCTTGA ATCCTAAGCC TTTGTGCCCT
  R
  TTTGTGTGAT TGTCCCAGGC AGTCTTCCAT TTTCCCATCA AACACGGAAA TCTACAAACT
  CTGACAAGCC TGCAGTAAAA CCCAACCCCC ATCATGGATT TTCTACCTGA TTTTCTGTCA
  TTTCCAAGTT TATGTCGTCT CTTTTTGTTT CAAAGTCATC TATCATGAAA CAAACAAAAA
  TTCCTTTACT TTGCAATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136104285	ENSMUSSNP7213479	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108577744					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152586980 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	1380 bp distal
Rr79922	regulatory region 79922	380 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates