rs108578556 SNP Detail

Summary

• ID
  rs108578556
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52140432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCCCCGCG CCCCGCAAGC CAGCTTGTGT GGGGTGTGTC
  GCTCCCCAGT AGGGGCATGC GGGCCAAGTT TTCCCCTCTC TTCAATGTTT GATGGAGAAG
  G
  TCTTTCCTAG AGGGGACCTC CTTCCCTTCA AACTGATGGG CTCTTCTTGC TATCCTCTTC
  TCTTGGGCAC CCCTATTGAG GAACACATAG TGGATGGAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325417191	CHEV_17_51972729	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108578556					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52140432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	within coordinates
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	12 bp downstream
Rr528751	regulatory region 528751	743 bp distal
Rr528752	regulatory region 528752	242 bp distal
Rr528753	regulatory region 528753	422 bp distal
Rr528754	regulatory region 528754	within coordinates
Satb1	special AT-rich sequence binding protein 1	114 bp upstream
Tssr145166	transcription start site region 145166	627 bp downstream
Tssr145167	transcription start site region 145167	604 bp downstream
Tssr145168	transcription start site region 145168	579 bp downstream
Tssr145169	transcription start site region 145169	387 bp downstream
Tssr145170	transcription start site region 145170	367 bp downstream
Tssr145171	transcription start site region 145171	143 bp downstream
Tssr145172	transcription start site region 145172	1058 bp upstream
Tssr148679	transcription start site region 148679	1509 bp upstream
Tssr148680	transcription start site region 148680	771 bp upstream
Tssr148681	transcription start site region 148681	750 bp upstream
Tssr148682	transcription start site region 148682	726 bp upstream
Tssr148683	transcription start site region 148683	707 bp upstream
Tssr148684	transcription start site region 148684	301 bp upstream
Tssr148685	transcription start site region 148685	266 bp upstream
Tssr148686	transcription start site region 148686	158 bp upstream
Tssr148687	transcription start site region 148687	134 bp upstream
Tssr148688	transcription start site region 148688	105 bp upstream