rs108579754 SNP Detail

Summary

• ID
  rs108579754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57387846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTTGCT GGTGGGCCCC
  AGGGACAGAG TGATGGCAGG AGACTTAAGC CACCTCCTCT TCAGCCTCCT CTTCGAACTC
  GCCCTCTTCA GCAGTGGCAT CCTGGTACTG CTGGTACTCG GACACCAGGT CGTTCATATT
  GCTCTCTGCT TCCGTAAACT CCATCTCGTC CATGCCTTCG CCCGTGTACC AGTGCAGGAA
  R
  GCCTTGCGTC TGAACATGGC GGTGAACTGC TCCGAGATGC GCTTGAACAG CTCCTGGATG
  GCAGTGCTGT TGCCGATGAA GGTGGCTGCC ATCTTCAGGC CCCGGGGTGG GATGTCACAT
  ACGGCTGTCT TGACATTGTT GGGGATCCAC TCAACGAAGT AACTGCTGTT CTTGCTCTGC
  ACACTTAACA TCTGCTCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398570144	MGP_WTSI_17_57220269	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108579754					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570144	MGP_WTSI_17_57220269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57387846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	243 bp proximal
Gm56907	predicted gene, 56907	within coordinates
Rr529267	regulatory region 529267	1649 bp distal
Rr529268	regulatory region 529268	563 bp distal
Tssr5182	transcription start site region 5182	602 bp downstream
Tssr145372	transcription start site region 145372	561 bp downstream
Tssr145373	transcription start site region 145373	241 bp downstream
Tssr145374	transcription start site region 145374	125 bp downstream
Tssr148882	transcription start site region 148882	431 bp upstream
Tssr148883	transcription start site region 148883	338 bp upstream
Tssr148884	transcription start site region 148884	269 bp upstream
Tssr148885	transcription start site region 148885	221 bp upstream
Tssr148886	transcription start site region 148886	200 bp upstream
Tssr148887	transcription start site region 148887	184 bp upstream
Tssr148888	transcription start site region 148888	141 bp upstream
Tssr148889	transcription start site region 148889	117 bp upstream
Tssr148890	transcription start site region 148890	16 bp upstream
Tssr148891	transcription start site region 148891	90 bp downstream
Tssr148892	transcription start site region 148892	110 bp downstream
Tssr148893	transcription start site region 148893	324 bp downstream
Tssr148894	transcription start site region 148894	396 bp downstream
Tssr148895	transcription start site region 148895	800 bp downstream
Tssr148896	transcription start site region 148896	862 bp downstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates