rs108581554 SNP Detail

Summary

• ID
  rs108581554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77040612 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A GAAGTGACCC AAGCCCTTGG AGGAGCCCAG AAGATTTTGA
  GCTGAATCCC AGACATTGGA CGGTTGGAGA TTGATTTTTG CTTTTGATTG TGACTGTGCC
  Y
  TGATATTTTC CCTCTTGAAG GAAGAAACTA TTTTAGTGGA ACCCACAGTT AAGAGACTTT
  TAATTGTAAA AAGACTTTGG ATTTTAAAAG AGATGGATAT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146372865	ENSMUSSNP4395832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108581554					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77040612 () rs orientation: reverse

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1895 bp upstream
Tssr7562	transcription start site region 7562	1891 bp upstream