rs108581683 SNP Detail

Summary

• ID
  rs108581683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171286956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGAGCT ACACAGAGAA
  ACCCTGTCTC GAAAAACCAA AAAAAAAAAA AAAAAAAAAA CCAGTGATGT CAGAAGGTGT
  GGAGGAAAGC AGGAGTTTGG AGACCATCTA GTTTAAACGA CTACATTTCA GATAAGAAAC
  AGGAATCTCA GAGGCCAAGA GACTCTATTC AGTTCTGTGG GTATTTAAAT CCAGGAAAAG
  K
  TACTTCATGC TTGCACCATA TGTGTCTGTC TGCATTTATC TAAGGACTCT GCCTTAAAGC
  TATAAATAAA CACATTCTTT GTGAATTTGA ACTTTGAAGA CAAATGAAAT GAAGGTGTAT
  GTGCTCATAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTTCACAGAG TCCTCTGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120001199	PARCsnp_1.02868	PARC_SEQ	INBRED	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108581683					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171286956 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	1440 bp distal
Rr31965	regulatory region 31965	246 bp proximal
Tssr10057	transcription start site region 10057	1269 bp downstream
Tssr10058	transcription start site region 10058	1029 bp downstream