rs108583438 SNP Detail

Summary

• ID
  rs108583438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46993386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTCAGG GCTGCACAGA
  GAAAAACCGA ATACAATGCC CCCCATTCTC CCCCTCACCC CCAAACAAGA TCACTTTATT
  CCTAAAAATT TCGTTACCTG AGATTTTGTG GACTTCAGAA TCTAAGTGAA ATGCTGTCTC
  ACTAGACTTG GGAATGGGCA GACCTGGCAA TAATGAGGGC GTGATGATGT GTTGGGGGTC
  Y
  TGGGCTGACT GAGGCACTAG GGAGAGAGGA GCTGGTCCCG TTCTTTTTTT TTTTTTTTTT
  TTTTTTTTTG GGTTTTCGAG ACAGGGTTTC TCTGTATAGC CCTGGCTGTC CTGGAGCTCA
  CTTTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCGCCT GCCTCTGCCT CCCGAGTGCT
  GGGATTAAAG GCGTGCGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398326276	MGP_WTSI_17_46819409	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	T	T	C	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	C	T	C	T	C	T	C	C	C	T	T	T	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108583438					SNP	C	C	C	T	T	C	T	T	C	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	C	T	C	T	C	T	C	C	C	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326276	MGP_WTSI_17_46819409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46993386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	884 bp distal
Klhdc3	kelch domain containing 3	1546 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	531 bp downstream
Rr405317	regulatory region 405317	1370 bp downstream
Rr527795	regulatory region 527795	1270 bp distal
Rr527796	regulatory region 527796	419 bp proximal
Tssr5136	transcription start site region 5136	1679 bp upstream
Tssr5137	transcription start site region 5137	1516 bp upstream
Tssr144872	transcription start site region 144872	1982 bp downstream
Tssr144873	transcription start site region 144873	1449 bp downstream
Tssr144874	transcription start site region 144874	1276 bp downstream
Tssr144875	transcription start site region 144875	426 bp downstream
Tssr144876	transcription start site region 144876	420 bp downstream
Tssr148367	transcription start site region 148367	1726 bp upstream
Tssr148368	transcription start site region 148368	1704 bp upstream
Tssr148369	transcription start site region 148369	1685 bp upstream
Tssr148370	transcription start site region 148370	1626 bp upstream
Tssr148371	transcription start site region 148371	1601 bp upstream
Tssr148372	transcription start site region 148372	1527 bp upstream
Tssr148373	transcription start site region 148373	555 bp upstream
Tssr148374	transcription start site region 148374	536 bp upstream