rs108584549 SNP Detail

Summary

• ID
  rs108584549
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40152613 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G GAGAGGTATT GAGAGATCCT CCGGTAGTAC TATATCCAGT
  TATCTGAGGA ACCACCAGAC TGATTTCCAG AGTGATTGTA CAAGCTTGCA ATCCAACCAA
  M
  AATGGAGGAG TGTTCCTCTT TCTCTACTTC CTCACCAGCA TCTGCTGTTA CCTGAATTTT
  TGATCTTAGT CATTCTGACT GATGTGAGGT AGAATCTCAG G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147794535	ENSMUSSNP6561047	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108584549					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40152613 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	1265 bp proximal
Gm26917	predicted gene, 26917	1275 bp upstream
Tssr148051	transcription start site region 148051	1598 bp downstream
Tssr148052	transcription start site region 148052	1761 bp downstream
Tssr148053	transcription start site region 148053	1906 bp downstream