rs108585718 SNP Detail

Summary

• ID
  rs108585718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATCTTC CTTCAGAAGG
  CCAAGAAATT TAAACCTATT CTCCCTCCTG TCTGATCTCC TTTCTCCAGC CCTTGGCTTA
  GGAAATACAG AGGGTTGGCA AGCCAATGAG AATTAGCTGT GTCTGTGATG TCATAAGTTA
  CCAGGCAGAC AGGTTTTCTG GAGTTTCCTA AATTACCCTT CCTGGTTGCT GGAGTAGGCA
  R
  GATGCAAACT TATCACGAGA ATTTCCAATG TAGTTCGTCT TACTTAGTCT GAGTCTGCGT
  TACTATAATA GAAAGCCACA GACTGGGTCA TTTATATAAA TAATAATAAA ATCTGGAGAT
  TTAGCCGGAC GTGGTGGCAC ACGCCTTTAA TCCCAGCACT CGGGAGGCAG AGGCAGGCAG
  ATTTCTGAGT TCGAGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147250092	ENSMUSSNP916400	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325640671	CHEV_18_60966434	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108585718					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939852 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1895 bp proximal
Rr405670	regulatory region 405670	1621 bp downstream
Rr405671	regulatory region 405671	823 bp downstream
Rr405672	regulatory region 405672	within coordinates
Tssr5344	transcription start site region 5344	891 bp upstream
Tssr151328	transcription start site region 151328	1763 bp downstream
Tssr151329	transcription start site region 151329	1692 bp downstream
Tssr151330	transcription start site region 151330	812 bp downstream
Tssr151331	transcription start site region 151331	793 bp downstream
Tssr151332	transcription start site region 151332	217 bp upstream
Tssr151333	transcription start site region 151333	755 bp upstream
Tssr151334	transcription start site region 151334	1119 bp upstream
Tssr151335	transcription start site region 151335	1128 bp upstream
Tssr151336	transcription start site region 151336	1162 bp upstream
Tssr151337	transcription start site region 151337	1216 bp upstream
Tssr151338	transcription start site region 151338	1272 bp upstream
Tssr151339	transcription start site region 151339	1451 bp upstream
Tssr153493	transcription start site region 153493	1275 bp downstream
Tssr153494	transcription start site region 153494	1297 bp downstream
Tssr153495	transcription start site region 153495	1513 bp downstream