rs108587283 SNP Detail

Summary

• ID
  rs108587283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164270707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATCGTCG TGAAGTAAGG TGAAAACCTT GTGTAAATTC
  TAACGAGAAT TCCGTGACAT TGCCTTTAAA CTACTAAAGC AACGGAGCCA AACGACAACC
  Y
  GTCCTTCTCA ATAGTGGGAC CACGTGCACC CATCCATCCC TGAGCCAGTC ACTTACTGCC
  ACAGTCCTCG AAAATCATGT CGTCCTTCTG GGCTGAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145978757	ENSMUSSNP3672171	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108587283					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164270707 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13722	regulatory region 13722	494 bp proximal
Rr25449	regulatory region 25449	429 bp proximal
Rr25450	regulatory region 25450	1673 bp proximal
Rr31656	regulatory region 31656	908 bp distal
Tssr9785	transcription start site region 9785	88 bp upstream
Tssr9786	transcription start site region 9786	126 bp upstream
Tssr14743	transcription start site region 14743	1562 bp upstream
Tssr14744	transcription start site region 14744	1520 bp upstream