rs108588167 SNP Detail

Summary

• ID
  rs108588167
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40156987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACCCACCG CCCTGTGCTC CGCGCCCGGT GCGGTCGACG
  TTCCGGCTCT CCCGATGCCG AGGGGTTCGG GATTTGTGCC GGGGACGGAG GGGAGAGCGG
  G
  TAAGAGAGGT GTCGGAGAGC TGTCCCGGGG CAACGCTCGG GTTGGCTTTG CCGCGTGCGT
  GTGCTCGCGG ACGGGTTTTG TCGGACCCCG ACAGGGTCG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385449	CHEV_17_39983041	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108588167					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40156987 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	1569 bp downstream
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	258 bp upstream
Rr331228	regulatory region 331228	1387 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	251 bp upstream
Tssr144603	transcription start site region 144603	356 bp upstream
Tssr144604	transcription start site region 144604	414 bp upstream
Tssr144605	transcription start site region 144605	464 bp upstream
Tssr144606	transcription start site region 144606	522 bp upstream
Tssr144607	transcription start site region 144607	631 bp upstream
Tssr144608	transcription start site region 144608	778 bp upstream
Tssr144609	transcription start site region 144609	922 bp upstream
Tssr144610	transcription start site region 144610	1081 bp upstream
Tssr144611	transcription start site region 144611	1218 bp upstream
Tssr144612	transcription start site region 144612	1347 bp upstream
Tssr144613	transcription start site region 144613	1466 bp upstream
Tssr144614	transcription start site region 144614	1498 bp upstream
Tssr144615	transcription start site region 144615	1585 bp upstream
Tssr144616	transcription start site region 144616	1620 bp upstream
Tssr144617	transcription start site region 144617	1693 bp upstream
Tssr144618	transcription start site region 144618	1723 bp upstream
Tssr144619	transcription start site region 144619	1745 bp upstream
Tssr144620	transcription start site region 144620	1794 bp upstream
Tssr144621	transcription start site region 144621	1899 bp upstream
Tssr144622	transcription start site region 144622	1918 bp upstream
Tssr144623	transcription start site region 144623	1957 bp upstream
Tssr148054	transcription start site region 148054	1935 bp upstream
Tssr148055	transcription start site region 148055	1686 bp upstream
Tssr148056	transcription start site region 148056	1338 bp upstream
Tssr148057	transcription start site region 148057	946 bp upstream
Tssr148058	transcription start site region 148058	341 bp upstream
Tssr148059	transcription start site region 148059	309 bp upstream
Tssr148060	transcription start site region 148060	157 bp upstream
Tssr148061	transcription start site region 148061	72 bp upstream
Tssr148062	transcription start site region 148062	427 bp downstream
Tssr148063	transcription start site region 148063	558 bp downstream
Tssr148064	transcription start site region 148064	800 bp downstream
Tssr148065	transcription start site region 148065	1662 bp downstream
Tssr148066	transcription start site region 148066	1738 bp downstream
Tssr148067	transcription start site region 148067	1819 bp downstream
Tssr148068	transcription start site region 148068	1935 bp downstream