rs108588853 SNP Detail

Summary

• ID
  rs108588853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTCCCTG AGAATGCTTT
  TTATCTCTCC TAACCAAAAG CTACACATTA CCGAAAAATT TGAACCTCAT GTAAGCGTGC
  AAGGCATAAT GAAATCGATT GCTGAGGACA GTGTGGCTTT AAAGTGTTAG CTCCTTGTTT
  CGAACATTGT CAATATTTTG GCATTGCTCA TAGGGAGTAT TGCTGCTTCT CATGATTCCA
  Y
  GAGTGAAATT GTCACATGAA TTATATGTCT TGTTGTGTGA CATTTAAATT AAAAATGAAG
  GTGATGTGTA TTCAGAAGAA GTTATTCATG CTATTAATTT AATGGATTAA ATTAAACATT
  TTAATTATCA TGAGTGGTTC TACTAGTTAC TACTTAAATA TCTGAACAGG GATTGCATTG
  TGCATTTTAA ATTTCTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148902935	ENSMUSSNP727103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324322206	CHEV_13_39161508	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108588853					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253615 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	within coordinates
Rr388296	regulatory region 388296	within coordinates