rs108589600 SNP Detail

Summary

• ID
  rs108589600
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89510424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAATTCTT ACAAACTGTC CTCTGACTTC CACACATGTG
  TGTGCATGCA CACACACGGA CACAAATTAA TAAAATTTTT AAAACGCTAA TAGAAGTAAA
  G
  TATATAAATA AAACAAAAAA TGTATCATAT TTTAATTACT TAAATTAGCA GCCTTAAAAG
  TTAAAATAAC CCTAACATAT AAAGCAACAG TATACCAAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147258277	ENSMUSSNP3357554	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108589600					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89510424 () rs orientation: forward

Symbol	Name	Function Class
Rr220830	regulatory region 220830	1977 bp proximal
Scyl2	SCY1-like 2 (S. cerevisiae)	within coordinates
Tssr98887	transcription start site region 98887	367 bp upstream