rs108589789 SNP Detail

Summary

• ID
  rs108589789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:9908413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCTGTG AATTCCATTT
  GCTTTATTCA TTATACTTGC GAGATGACTG ATACAGAGCA AATGCACAAT TAAATATAGT
  ACTTATTCAG GAAAAAAAGT TCCTTGAAAG GAGGTACACT GTACATATTT TAACAGGTAT
  GTGCGTGTGC TTGTGTGTGT GCGCCTCTCT CTCTCTCTCT CTCTCTCTCC CTCCCCCCTC
  Y
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTAAAATGT GTAATAGGTG AGTGTCCCCA GGGCTTTACC AGGACAGAAG
  TGTGATCTGA TTGGTTGACT GAGTTATGTG ACGTGCCCAA CTTTGAGCAA GGCCACCTTG
  CTCTGGCTGG ACTGCATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
ss130532177	NCBIM37_NT_039638_chr17_9882349	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
rs108589789					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130532177	NCBIM37_NT_039638_chr17_9882349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:9908413 () rs orientation: forward

Symbol	Name	Function Class
D17Mit97	DNA segment, Chr 17, Massachusetts Institute of Technology 97	662 bp distal
Rr392258	regulatory region 392258	1060 bp upstream