rs108589920 SNP Detail

Summary

• ID
  rs108589920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64699808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT CCCTACGCCC AATTTTAATC
  Y
  TAATTTGTAG TTCAACAAAT GTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136565266	ENSMUSSNP1871194	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss322985868	CHEV_9_64640333	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108589920					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64699808 () rs orientation: forward

Symbol	Name	Function Class
Gm36459	predicted gene, 36459	1929 bp downstream
Rr681317	regulatory region 681317	1514 bp distal
Rr681318	regulatory region 681318	869 bp distal
Rr681319	regulatory region 681319	within coordinates
Rr681320	regulatory region 681320	1731 bp proximal
Tssr2909	transcription start site region 2909	1716 bp upstream
Tssr85624	transcription start site region 85624	1559 bp downstream
Tssr90157	transcription start site region 90157	1698 bp upstream