rs108590220 SNP Detail

Summary

• ID
  rs108590220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTACTT ATGCTTTCAT
  TTCCTATAAT CTCTTCCTTT AGCCCCAATA TCTGTCCTGT ACTCTACTCA GTTAATTATG
  TTTACCTTCT GGTTACTTTG AAATTCTATA CGAGTTTTAG GATCAACATA TCAGTTTTGG
  TAGAAAAACA GCCAAGAATT TTAATTAGTT TGTTTGGTTA CAGGCAGGGT GTAACTCATG
  Y
  TTTCCTAGCT GATCTTGAAT TCTCAAGAGA TCTGTCTGCC TACTAAGGCC TAGCTTGGCT
  TTCTAATAAA CATAGGATAT CTTGCTTGTT CATTCCTTCC CTTTTTTTTT TGTAGCCAGT
  TGTGGTAACA CATGCTTATC ATCCAAGGAT TGAGAAAAGG CATGGAAACC ACAAGTTCTC
  CCTCCCCTCC CCTCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145293428	ENSMUSSNP2426436	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108590220					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815277 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1974 bp downstream
Tssr67723	transcription start site region 67723	521 bp downstream
Tssr67724	transcription start site region 67724	3 bp downstream
Tssr67725	transcription start site region 67725	28 bp upstream
Tssr67726	transcription start site region 67726	41 bp upstream
Tssr67727	transcription start site region 67727	105 bp upstream