rs108590339 SNP Detail

Summary

• ID
  rs108590339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCACAGT TAGCATCTCT
  GTTTTCATCA ATGGAGACTG GCGTCTCTGA GCCAGTTGGA TGCCCAGGTT TGTCTCTGAA
  GCCAGCGCTG CCTCAGCGGC TCTCAGACTC TCCCCTCTGT GTACTGGGGA CACTTCCCCC
  CCATTCCACC TCTCCTGAGC CACATGCCCT GCTTCGCCCT AACTGCAGAT GGTGGCCACA
  R
  GAAGAACCCC AAACCAGATC TCTTCTGGCC CCCAAATTCA GGGCAAAAAC CCTTGTCAGC
  CTTAACCCTG GGGGACCTGG GCTCTGACTC AGTCTCTGCG TGTAGAATCG GGTGTAAAGG
  GGGAAGCTCA CTGCTAATCG GGGTCCCAGG GGCCTCTACA GTCTTAGGAC CCTGTGGAGG
  AGGGGGTGGG GTGGGGTCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736204	ENSMUSSNP6987555	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108590339					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	769 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	236 bp proximal
Rr603761	regulatory region 603761	1227 bp proximal
Rr603762	regulatory region 603762	1737 bp proximal
Tssr40063	transcription start site region 40063	1058 bp downstream
Tssr40064	transcription start site region 40064	997 bp downstream
Tssr40065	transcription start site region 40065	970 bp downstream
Tssr40066	transcription start site region 40066	866 bp downstream
Tssr40067	transcription start site region 40067	812 bp downstream
Tssr40068	transcription start site region 40068	757 bp downstream
Tssr40069	transcription start site region 40069	630 bp downstream
Tssr40070	transcription start site region 40070	536 bp downstream
Tssr40071	transcription start site region 40071	519 bp downstream
Tssr40072	transcription start site region 40072	474 bp downstream
Tssr40073	transcription start site region 40073	449 bp downstream
Tssr40074	transcription start site region 40074	422 bp downstream
Tssr40075	transcription start site region 40075	398 bp downstream
Tssr40076	transcription start site region 40076	382 bp downstream
Tssr40077	transcription start site region 40077	362 bp downstream
Tssr40078	transcription start site region 40078	1342 bp upstream
Tssr44315	transcription start site region 44315	993 bp upstream
Tssr44316	transcription start site region 44316	895 bp upstream
Tssr44317	transcription start site region 44317	867 bp upstream
Tssr44318	transcription start site region 44318	467 bp upstream
Tssr44319	transcription start site region 44319	501 bp downstream