rs108592230 SNP Detail

Summary

• ID
  rs108592230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGAGTTC AGCTGGACTG
  AGAGCCAGTC CCAACCTGTT CCAGACTCCA CTTCATCCTT CAAGCCTGGT GCCTGGACAC
  CCTGAGGGAG GAAACAGAGG ACAGAGAAGC ACTTCTGGCA CCCAACGCGG CCCACAGCTG
  GAGGAAGCTA ACATACACCT GGGAGGATGC TGGTACTTGA TGGGCTGGGC TATGTCACAA
  R
  AGGGTGTGGT ACAGACCTTT GATGGGCTGG GCTATGTCAC AAGGGAGTGT GGTACAAATG
  CTTGCCATAT AATGCTTTGC TATTGCTCTC CTGGTTGGGT CACCAATCTT TAGACACTTA
  AATTGTCTAA ATGTAAAGAG AATTAATGTC ACTACAGGCT GCTAAAGAGC AGAAGTTACT
  GTTGGCATGA CCTGGCAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147608128	ENSMUSSNP2072310	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108592230					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726470 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	16 bp upstream
Cpgi7034	CpG island 7034	1110 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	990 bp downstream
Tssr131078	transcription start site region 131078	949 bp downstream
Tssr131079	transcription start site region 131079	94 bp upstream
Tssr131080	transcription start site region 131080	135 bp upstream
Tssr131081	transcription start site region 131081	166 bp upstream
Tssr131082	transcription start site region 131082	441 bp upstream
Tssr131083	transcription start site region 131083	634 bp upstream
Tssr131084	transcription start site region 131084	680 bp upstream