rs108593648 SNP Detail

Summary

• ID
  rs108593648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57389191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGGCAT TTAAGACTAG
  CTACAGTTAC ATGATGAGTT GGAGGCCAGC CTGTGCTACA TGAGATTCAG TAGTTAATAG
  ATAACAATGA AAAGACTGGA AGAATAATGC TAGCACTATT GTTATTTTAC TGATTTAATT
  TACTTTTGGG GACTGTGGTG ATTAGTTTTA TTTTATTTTA TTCATTCATT CATTCATTCA
  Y
  TCATTTATTT ATTTTAATAG CTTTGTTCTA GCTGGATGTG GTAGTGTGTA CCTTTAAACT
  CAGCACTGGG GAGGGGGAGC ACAAGGCCAG CCTGTTTACA CAGTGAGACT TAAAAACCAA
  CCAACCAACC AACCAACCAA CCAACCAACC AACCAACCAA CCAAAAAAGC TCTATTTTTA
  TGTGTGTGTG CATGCAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130939435	NCBIM37_NT_039649_chr17_57221614	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108593648					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130939435	NCBIM37_NT_039649_chr17_57221614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57389191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	351 bp distal
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1908 bp distal
Tssr5182	transcription start site region 5182	1947 bp downstream
Tssr145372	transcription start site region 145372	1906 bp downstream
Tssr145373	transcription start site region 145373	1586 bp downstream
Tssr145374	transcription start site region 145374	1470 bp downstream
Tssr148882	transcription start site region 148882	1776 bp upstream
Tssr148883	transcription start site region 148883	1683 bp upstream
Tssr148884	transcription start site region 148884	1614 bp upstream
Tssr148885	transcription start site region 148885	1566 bp upstream
Tssr148886	transcription start site region 148886	1545 bp upstream
Tssr148887	transcription start site region 148887	1529 bp upstream
Tssr148888	transcription start site region 148888	1486 bp upstream
Tssr148889	transcription start site region 148889	1462 bp upstream
Tssr148890	transcription start site region 148890	1361 bp upstream
Tssr148891	transcription start site region 148891	1241 bp upstream
Tssr148892	transcription start site region 148892	1222 bp upstream
Tssr148893	transcription start site region 148893	1009 bp upstream
Tssr148894	transcription start site region 148894	937 bp upstream
Tssr148895	transcription start site region 148895	533 bp upstream
Tssr148896	transcription start site region 148896	466 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates