rs108598953 SNP Detail

Summary

• ID
  rs108598953
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54599282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGATTACAGG CATGAACCAC CATGACAGCC AAGGGCTGGC
  TTTGAATAAA ACTCTTCTAC GAATTCTGCT GAGACAAACA TTTGACTCCA GTAGTGCTAA
  G
  ACTCAAATAC TTGTACAGGA GTGTTTCCAG CAGTTCTAAC ACAACAGTAT GAAGGCAGAA
  AATGGCCCAT CAATTTAAAA AAATCCTCAA AGCCGGGCAG T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135184751	ENSMUSSNP7140301	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108598953					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54599282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	488 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	701 bp upstream
Rr576829	regulatory region 576829	168 bp proximal
Rr576830	regulatory region 576830	762 bp proximal
Rr576831	regulatory region 576831	1255 bp proximal
Supt20	SPT20 SAGA complex component	946 bp upstream
Tssr29131	transcription start site region 29131	914 bp upstream
Tssr29132	transcription start site region 29132	944 bp upstream
Tssr29133	transcription start site region 29133	988 bp upstream
Tssr29134	transcription start site region 29134	1022 bp upstream
Tssr29135	transcription start site region 29135	1173 bp upstream
Tssr29136	transcription start site region 29136	1198 bp upstream
Tssr29137	transcription start site region 29137	1227 bp upstream