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rs108599699 SNP Detail
Summary
  • ID
    rs108599699
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:48041598 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAGTGCTGA TCCTTGAAAA
AGAATATGTC TCCTGCCAGA CTCATCAAGG TGGGGTGGGG ACTTGAGTGG GGAGAGGGTC
TTCAGTGTGG GTAGTCACTG TCCTGTGTTT TAATCTCCAT CCCCAGGTCC AAAGCATCCA
GGTCCCTAAC CAGGAGTTCG GCCTGAGTGA GAATGAGCCT GGCACCAATT TTGTCTACGC
M
CAATTTGACG GGATCATGGG CCTGGCCTAC CCCGGCCTGT CTTCAGGGGG CGCCACCACC
GCCTTGCAGG GCATGTTGGG GGAGGGCGCT CTGTCCCAGC CCCTCTTCGG TGTCTACCTT
GGCAGGTAAG CAACCACTTA GCAAGCCCTC AGGTCTGCTA CTCAGCTGAG GTTCACTAGT
TTGAGGGTTG GCGGCTTCGG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398352978 MGP_WTSI_17_47867622 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C C A C C C C C C C C C C C C A C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108599699 SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C C A C C C C C C C C C C C C A C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398352978 MGP_WTSI_17_47867622 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48041598 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 36 bp proximal
Tssr5147 transcription start site region 5147 1922 bp downstream
Tssr5148 transcription start site region 5148 1360 bp upstream
Tssr5149 transcription start site region 5149 810 bp upstream
Tssr145004 transcription start site region 145004 1931 bp downstream
Tssr145005 transcription start site region 145005 1910 bp downstream
Tssr145006 transcription start site region 145006 1881 bp downstream
Tssr145007 transcription start site region 145007 1849 bp downstream
Tssr145008 transcription start site region 145008 1828 bp downstream
Tssr145009 transcription start site region 145009 1800 bp downstream
Tssr145010 transcription start site region 145010 1418 bp downstream
Tssr145011 transcription start site region 145011 1399 bp downstream
Tssr145012 transcription start site region 145012 1382 bp downstream
Tssr145013 transcription start site region 145013 1330 bp downstream
Tssr145014 transcription start site region 145014 536 bp downstream
Tssr145015 transcription start site region 145015 521 bp downstream
Tssr145016 transcription start site region 145016 517 bp downstream
Tssr145017 transcription start site region 145017 68 bp downstream
Tssr145018 transcription start site region 145018 62 bp downstream
Tssr145019 transcription start site region 145019 31 bp downstream
Tssr145020 transcription start site region 145020 2 bp downstream
Tssr145021 transcription start site region 145021 15 bp upstream
Tssr145022 transcription start site region 145022 47 bp upstream
Tssr145023 transcription start site region 145023 74 bp upstream
Tssr145024 transcription start site region 145024 185 bp upstream
Tssr145025 transcription start site region 145025 529 bp upstream
Tssr145026 transcription start site region 145026 785 bp upstream
Tssr145027 transcription start site region 145027 1718 bp upstream
Tssr145028 transcription start site region 145028 1746 bp upstream
Tssr145029 transcription start site region 145029 1787 bp upstream
Tssr148459 transcription start site region 148459 1872 bp upstream
Tssr148460 transcription start site region 148460 1820 bp upstream
Tssr148461 transcription start site region 148461 1808 bp upstream
Tssr148462 transcription start site region 148462 1765 bp upstream
Tssr148463 transcription start site region 148463 1392 bp upstream
Tssr148464 transcription start site region 148464 1307 bp upstream
Tssr148465 transcription start site region 148465 546 bp upstream
Tssr148466 transcription start site region 148466 512 bp upstream
Tssr148467 transcription start site region 148467 41 bp upstream
Tssr148468 transcription start site region 148468 4 bp upstream
Tssr148469 transcription start site region 148469 77 bp downstream
Tssr148470 transcription start site region 148470 1754 bp downstream
Tssr148471 transcription start site region 148471 1773 bp downstream
Tssr148472 transcription start site region 148472 1789 bp downstream
Tssr148473 transcription start site region 148473 1806 bp downstream
Tssr148474 transcription start site region 148474 1825 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory