rs108606379 SNP Detail

Summary

• ID
  rs108606379
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:45543744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTTCTT GTCCCCGGGA
  AGCCTCGGGG CTCGGGGATG CTCCCCGGGA GCCGGGCGAC GTTGCAGCAG CGGCCCGTGG
  AGTGCTCCCG GGACGCCAGG CTCCAGCCTC CTCCTCCTCC CCGCGAGTGG AGAGTGCGGT
  GGGGGGGGGG CGGGGGGAGC ATAGAGGACG CTTACGGTGG GGGATCCGGG GCCCGGAGAC
  T
  AGAACACTGC TGGGAACCTC CACCCTGTCC GTTAGCCTGG CACTTTTCTC TAAAGAAGGT
  GGCCCGGCAC ACCTGCCGCA GGTGTGTGTG TGTGTGATGC CTCCCGTGGA GTCCTTGCAA
  AGCCCGGCAG CGCCACCCGC GTCCCGGGAT GAGATGGTTG CAAGCGGTCG CTGGCCCCGG
  GGCTCCCTAG CTGATCAGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148962679	ENSMUSSNP4938534	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs108606379					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45543744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	within coordinates
Gm56579	predicted gene, 56579	1543 bp upstream
Mylip	myosin regulatory light chain interacting protein	Intron
Rr403746	regulatory region 403746	529 bp downstream
Rr478672	regulatory region 478672	1576 bp distal
Rr478673	regulatory region 478673	516 bp distal
Rr478674	regulatory region 478674	735 bp distal
Rr478675	regulatory region 478675	169 bp proximal
Rr478676	regulatory region 478676	1053 bp proximal
Rr478677	regulatory region 478677	1554 bp proximal
Tssr119571	transcription start site region 119571	518 bp downstream
Tssr119572	transcription start site region 119572	1496 bp upstream
Tssr119573	transcription start site region 119573	1512 bp upstream