rs108609743 SNP Detail

Summary

• ID
  rs108609743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85341738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCCCT GTCTCGGGAG
  CAGTCCTCCT GCCTGATTGT GTGTTTCTCT CCTGCTTCTT CCAATCCTCC TGCTCAGGTC
  TGTATCTTTC CTGCTTCTTC CAAGTCGTTT ATTGTAGACT CTCGCCCCAC TGGAGCCTCC
  CTCCTCTCAC CGTGACTCTG CTGGTCCGAG GACAGCAGCT TTCCAGCTAA GCACACTCAC
  R
  CATCATGACC ATGTGACGTC CCTCTCCGTG ACAGCTCATC CACCAGGCTC TGTGCAGGAC
  CAGCTCATGG CAGTCAGCAG CGGGTCTTGG CAGGCTTCTT GCTCTAACTA ACCATCTCCT
  TGTTAACAAA CTACGCCTTG TTAAATCGCC ATTAGTAAAC TCGTACCGTG TGCAGGCTGT
  CTGTTGAGGG TCTTACATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146149168	ENSMUSSNP1940604	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108609743					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85341738 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	within coordinates
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	675 bp downstream