rs108612189 SNP Detail

Summary

• ID
  rs108612189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCCACT ACACTGAAGC
  TCTGGTTCTG GGGACCCTAT GTTCTCCTCT ACCCCACCTC CCCACTTTCT GGCCTCCAGC
  AACTGCACTT GGAGCAGACA GACAGATGGG CAGGCAAAAG AGCTCATACA GAGTAAATAA
  AAAATAAGCA AAAAATGTAA TAAAAATTTT CAGAATACTC ACTCCTTTCT GCTCCTAAAG
  M
  GACCACCTTT TTAAAAACAA AATAACCTAC GGGTAAGAGA ACTGCTGTAT CCTTTGTCCC
  TCTTCCATTT CTCGGCTATT ACACACCTTC ACATTTCTGA AGCACGGCAC CAACATTTAT
  TAGTCCTCAC AACATCCCTG TGAGGTAGGT CAACATGTCC TTTATAGCAG AGAATGGAGA
  AGCCAGAAGA GGCTCTTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137771132	ENSMUSSNP5315518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108612189					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792110 () rs orientation: forward

Symbol	Name	Function Class
Rr260899	regulatory region 260899	510 bp distal
Rr260900	regulatory region 260900	1091 bp proximal
Rr263772	regulatory region 263772	1086 bp distal
Snx6	sorting nexin 6	1014 bp downstream