rs108613027 SNP Detail

Summary

• ID
  rs108613027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85342616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCTTCC AGAGGAGCCA
  GTTCCCGGCA TATACACTGG GTAGCATACA GCTACCTGTA ACTTTGGCCC TAGGGTATCA
  GACATTGTCT CTAGCTTCCA TTCCCATGCA CATATGACAT ATATACATAT GACCATGAAT
  TCACATAGAT AAAAATAACT CTTAAAAAGT TAGCATATAC ATTAGCATAT ACATATATAT
  R
  TATATATATA TATATATATA CACACATATA TATTTGTATG TGTATAGGAT GTCATACTAC
  TCAGCAGTTC AATGAACTAC TAGTCCATTT TTGCAGCTGG AGAGATGGCT CAGCTGTCAA
  AGCACTGGCT GCTCTTCCAG AGTACCTGGA TCCAAGCCTC AGCATCCCAT AGCAGCCCAC
  AACCATACAT AGCTCCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss131340764	NCBIM37_NT_039649_chr17_85434528	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs108613027					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131340764	NCBIM37_NT_039649_chr17_85434528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85342616 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	616 bp distal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	1553 bp downstream