rs108613315 SNP Detail

Summary

• ID
  rs108613315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24691125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTTTCC CCTAATGATC
  CTGCGGCAGA GGCGCCTGCT ACTGCGTCCC AGTTCCTCAC CTGTGGGGTG GGAGCGCTCT
  ATAGCTGGGG TTTGGATGCC AACCCCGACA GCCTCCGCTA CTCTGCCTCT TTGACATCAC
  AATTGTCTGT TCTGTTTCAG ATGCTCAGTA CTGCAGACCC TCATGCACAG TAACAGCCCA
  R
  CTAAACTTGT CTTTTGTGAA CTTGGCCTAG GTGTCTTAAG TGTGGCCTGC TGAGCAGCTC
  CCAACACCAT GCTGCTTTCC CGGGAGCTCA GAACAGTTGG GTTGTTTGGG GTTTTGTTTT
  TTTCAAACTA GTGAACAACA CTGTCAAGTG TGAAATTGGA TCTTACGCGT GTGGATTAAT
  AGTTGTGCTG TCGCAACGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397856961	MGP_WTSI_17_24609096	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108613315					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397856961	MGP_WTSI_17_24609096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24691125 () rs orientation: forward

Symbol	Name	Function Class
4833447I15Rik	RIKEN cDNA 4833447I15 gene	1910 bp upstream
Bricd5	BRICHOS domain containing 5	1733 bp upstream
Cpgi8720	CpG island 8720	677 bp distal
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	1400 bp downstream
Pgp	phosphoglycolate phosphatase	within coordinates
Rr405085	regulatory region 405085	1893 bp downstream
Rr523319	regulatory region 523319	1749 bp distal
Rr523320	regulatory region 523320	within coordinates
Rr523321	regulatory region 523321	1243 bp proximal
Tssr143033	transcription start site region 143033	1965 bp downstream
Tssr143034	transcription start site region 143034	1670 bp downstream
Tssr143035	transcription start site region 143035	1648 bp downstream
Tssr143036	transcription start site region 143036	1316 bp downstream
Tssr143037	transcription start site region 143037	1744 bp upstream