rs108616100 SNP Detail

Summary

• ID
  rs108616100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128550519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCCATTATCA CCATGGTGGG AAGTGTGGCA GTGTACAGGC
  AGACATGGTG CTGGAGGAGC TGGGAACATC TTGATCTGAA GGCAGCCAGG AGGAGACTGT
  Y
  TTCTGCATTG GGCACAGCTT GAGCATAGGA GACCTCAAAG CCCGCCTACA CAGTGACACA
  CTTCCTCCAA CAAGGCCACA CTTATTCCAT ACCTCCTAAT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145560957	ENSMUSSNP3792975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108616100					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128550519 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	509 bp proximal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	422 bp proximal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr58325	regulatory region 58325	1119 bp distal
Rr58326	regulatory region 58326	within coordinates
Tssr20064	transcription start site region 20064	117 bp upstream
Tssr20065	transcription start site region 20065	157 bp upstream
Tssr20066	transcription start site region 20066	456 bp upstream
Tssr20067	transcription start site region 20067	492 bp upstream