rs108616421 SNP Detail

Summary

• ID
  rs108616421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35113179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGATGT AGGACTTAAG
  TGGCAACTCC TTTTGACAAT CAGTACCATG TCTCACCAGA AAGAGTCACA GAAGTGGACA
  GATCCATTCT AACAGAGGAT AAAAACAGAA TGTGGTGGTA ACGCCACCAC CTACAACCAT
  CCCAGTAGGC TACTTGCTCT ATAAAGTAAC ACAAGCTACA GCTATCTAGC TGATATATCA
  R
  AGAGAACAAT TAAGCTTTAC TCTTAAAAAG ACTTTATGAG GGGCTGGTGA GATGGCTCAG
  TGGTTAAGAG CGCCGACTGC TCTTCCGAAG GTCCCGAGTT CAAATCCCAG CAACCACATG
  GTGGCTCACA ACCATCCGTA ACGAAATCTG ATGCCCTCTT CTGGAGTGTC TGAAGACAGC
  TACAGTGTAC TTACATATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148903671	ENSMUSSNP5082090	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108616421					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35113179 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	603 bp proximal
Gm53547	predicted gene, 53547	within coordinates